Final answer:
Cyanide increases the pH in the intermembrane space and inhibits ATP synthesis by blocking the electron transport chain, leading to a build-up of NADH. This prevents the oxidation of NADH to NAD+, halting glycolysis and the citric acid cycle, as they require oxidized NAD+ and FAD to function.
Step-by-step explanation:
When cyanide inhibits cytochrome c oxidase, it effectively halts the electron transport chain (ETC). As a consequence, the pH of the intermembrane space would increase, due to a decrease in the influx of protons (H+) from the mitochondrial matrix to the intermembrane space. This disruption in proton gradient affects ATP synthesis negatively by inhibiting ATP synthase, the enzyme responsible for producing ATP using the proton gradient. Without this gradient, ATP synthesis stalls, leading to a depletion of energy within the cell.
The best explanation for why glycolysis and the citric acid cycle also stop when the electron transport chain is inhibited by cyanide is that there is a high level of NADH in the cell, and NAD+ and FAD are not available in their oxidized forms to accept electrons. These components are essential for the continuation of glycolysis and the citric acid cycle, as they act as electron acceptors during various steps of these metabolic processes. When the ETC is blocked, NADH and FADH2 cannot be oxidized back to NAD+ and FAD, causing these cycles to halt.