Final answer:
Homologous chromosomes have the same linear order of genes and are similar copies of each other. The genotype refers to the genetic makeup, while the phenotype refers to the physical expression of traits. During meiosis, alleles are separated, and during fertilization, they are brought back together.
Step-by-step explanation:
Homologous chromosomes have the same linear order of genes and are similar copies of each other, one from each parent. Genotype refers to the genetic makeup of an individual and in this case, the plant's genotype is YY or yy, depending on the alleles it carries. Phenotype refers to the physical expression of traits, and for this plant, the phenotype is tall or short, depending on the height alleles it carries. These alleles would be separated from each other during meiosis, specifically during the process of crossing over. Two pea plant height alleles would be brought back together into a cell during fertilization.