Final answer:
Bacteria use a defense mechanism where DNA methylase methylates their own DNA, making it immune to the cleavage by restriction endonucleases, which, in turn, cleave unmethylated foreign DNA including that from viruses.
Step-by-step explanation:
The restriction endonuclease has a defense mechanism in the bacterial system against foreign DNA such as viruses, by differentiating between its own DNA and that of the invaders. Bacterial DNA is protected through methylation by DNA methylase, which modifies nucleotides at specific sequences in the bacterium's genome.
These sequences are short and palindromic, and are recognized by the restriction endonucleases that will not cleave methylated DNA. Therefore, since bacterial DNA is methylated, it is not cleaved by its own restriction endonucleases. In contrast, when foreign DNA, such as that from viruses, is not methylated, the restriction endonucleases cleave this DNA at these specific sequences. This process leads to the destruction of the intruder DNA while keeping the host bacterial DNA intact.
Essentially, the correct answer to the question of how restriction endonuclease is able to protect its own DNA is By methylation of bacterial DNA by restriction enzyme.