Final answer:
Rho-dependent termination involves the action of a protein called rho, while rho-independent termination does not. The formation of a hairpin loop in the mRNA is the main structural difference between the two types of termination.
Step-by-step explanation:
Rho-dependent termination and rho-independent termination are two different ways in which transcription is terminated in prokaryotes.
Rho-dependent termination involves the action of a protein called rho. Near the end of the gene, the RNA polymerase encounters a run of G nucleotides on the DNA template, leading to the polymerase stalling. The rho protein then collides with the polymerase, releasing the mRNA from the transcription bubble.
In contrast, rho-independent termination does not require a protein factor like rho. Instead, when the RNA polymerase encounters a region rich in C-G nucleotides on the DNA template, the mRNA forms a hairpin loop, causing the polymerase to stall and leading to the termination of transcription. This hairpin structure is the main structural difference between rho-dependent and rho-independent termination.