Final answer:
Peptide bonds in proteins are formed between the amino group of one amino acid and the carboxyl group of another, through a dehydration synthesis reaction.
Step-by-step explanation:
The functional groups that participate in peptide bond formation when amino acids are linked to form a protein are the amino group (A) and the carboxyl group (C). During this reaction, a molecule of water is released. The peptide bond specifically links the carboxyl end of one amino acid with the amino end of another. This process is known as a dehydration synthesis reaction. Contrary to these active groups in peptide bonding, the hydrogen atom (B) and the R group (D), which is the amino acid side chain, do not directly partake in the formation of peptide bonds.