Final answer:
The high similarity of Alu retrotransposons in humans and chimpanzees is most likely due to duplication and divergence of the Alu sequences in the chimpanzee genome before humans and chimpanzees diverged.
Step-by-step explanation:
The most likely explanation for the high similarity of Alu retrotransposons in humans and chimpanzees is that most of the Alu sequences in the chimpanzee genome underwent duplication and divergence before humans and chimpanzees diverged. This means that these Alu sequences were already present and in similar positions in the common ancestor of humans and chimpanzees. The high similarity suggests that these Alu retrotransposons have been conserved due to their functional importance or beneficial role in the genome of primates.