Final answer:
The Linnaean system is based on physical similarities between organisms and does not account for genetic differences. Phylogenetic trees, on the other hand, incorporate genetic, biochemical, and embryological comparisons to represent evolutionary relationships more accurately.
Step-by-step explanation:
The Linnaean system is based on physical similarities between organisms and does not account for genetic differences. It uses visible similarities such as the presence or absence of certain physical traits to classify organisms into a hierarchical model. However, advancements in technology and scientific understanding have led to the development of phylogenetic trees that take into account genetic, biochemical, and embryological comparisons to depict evolutionary relationships more accurately.
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