- Sedimentation from coastal development, urban stormwater runoff, forestry, and agriculture.
Sedimentation has been identified as a primary stressor for the existence and recovery of coral species and their habitats. Sediment deposited onto reefs can smother corals and interfere with their ability to feed, grow, and reproduce
- Nutrients (nitrogen and phosphorous) from agricultural and residential fertilizer use, sewage discharges (including wastewater treatment plants and septic systems), and animal waste
Nutrients are generally recognized as beneficial for marine ecosystems; however, coral reefs are adapted to low nutrient levels; so an excess of nutrients can lead to the growth of algae that blocks sunlight and consumes oxygen corals need for respiration. This often results in an imbalance affecting the entire ecosystem. Excess nutrients can also support growth of microorganisms, like bacteria and fungi, that can be pathogenic to corals.
- Pathogens from inadequately treated sewage, stormwater, and runoff from livestock pens. Although rare, bacteria and parasites from fecal contamination can cause disease in corals, especially if they are stressed by other environmental conditions. Coral disease occurs in healthy ecosystems, but the input of pathogen-containing pollution can exacerbate the frequency and intensity of disease outbreaks.
- Toxic substances, including metals, organic chemicals and pesticides found in industrial discharges, sunscreens, urban and agricultural runoff, mining activities, and runoff from landfills
- Pesticides can affect coral reproduction, growth, and other physiological processes. Herbicides, in particular, can affect the symbiotic algae (plants). This can damage their partnership with coral and result in bleaching. Metals, such as mercury and lead, and organic chemicals, such as polychlorobiphenyls (PCBs), oxybenzone and dioxin, are suspected of affecting coral reproduction, growth rate, feeding, and defensive responses.
- Trash and micro-plastics from improper disposal and stormwater runoff. Trash such as plastic bags, bottles, and discarded fishing gear (also called marine debris) that makes its way into the sea can snag on corals and block the sunlight needed for photosynthesis, or entangle and kill reef organisms and break or damage corals. Degraded plastics and microplastics (e.g., beads in soap) can be consumed by coral, fish, sea turtles, and other reef animals, blocking their digestive tracts and potentially introducing toxics.
- Overfishing can alter food-web structure and cause cascading effects, such as reducing the numbers of grazing fish that keep corals clean of algal overgrowth. Blast fishing (i.e., using explosives to kill fish) can cause physical damage to corals as well.
- Coral harvesting for the aquarium trade, jewelry, and curios can lead to over-harvesting of specific species, destruction of reef habitat, and reduced biodiversity.