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If a trait had no effect on an organism's fitness what would happen to the allele for that trait

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Perhaps nothing. Any trait that natural selection is blind to could pass, but many would pick-up deleterious mutations as the organisms possessing such traits would not be eliminated from the gene pool. Great ape vitamin C synthesizing pathways are one example of this. One gene coding for a part of this pathway has been ' knocked out ' by mutations and great apes ( including us ) can not synthesize vitamin C.
User Dhanveer Thakur
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