Answer:
In highly diverged lineages, the substitutions process will occur at sites that have been substituted previously.
Step-by-step explanation:
Molecular clock uses the mutation rate to reduce the time in prehistory when the life forms are diverged. The molecular clock uses the sequence of amino acids and nucleotide sequence for the DNA.
This clock does not measure any time but the number of mutations, and other changes over certain time. Sometimes its useful property might be limited due to the highly diverged lineages.