Final answer:
Methylated DNA is usually a sign that the gene expression is being silenced as this epigenetic modification leads to a chromatin structure that prevents transcription factors from initiating transcription.
Step-by-step explanation:
If one were to observe the activity of methylated DNA, one would expect it to have turned off or slowed down the process of transcription. Methylation of DNA is a common epigenetic signaling tool that cells use to lock genes in the "off" position. In particular, the methylation of cytosine bases in DNA can lead to the recruitment of proteins that bind to methylated DNA and change the chromatin structure to a more closed conformation. This prevents transcription factors from accessing the DNA and thereby reduces the expression of genes.
For instance, the addition of methyl groups to the DNA base cytosine is typically associated with transcriptional repression. DNA methylation can also recruit proteins that can further modify histones to a state that is not permissive for transcription. In summary, the presence of highly methylated DNA regions with deacetylated histones tends to indicate a tightly coiled chromatin structure that is transcriptionally inactive.