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How does the translocon know which side to orient the protein in a membrane?

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Final answer:

The translocon recognizes and guides the insertion of proteins into the membrane based on specific signals present in the protein sequence.

Step-by-step explanation:

The translocon, a complex of proteins in the endoplasmic reticulum (ER), plays a crucial role in orienting proteins in a membrane. The translocon recognizes and guides the insertion of proteins into the membrane based on specific signals present in the protein sequence. These signals, known as signal sequences or hydrophobic domains, can determine the orientation of the protein in the membrane.

For example, an N-terminal signal sequence found in many membrane proteins interacts with the signal recognition particle (SRP) during protein synthesis. The SRP recognizes the signal sequence and directs the ribosome-polypeptide complex to the translocon on the ER membrane. The complex then inserts the protein into the membrane with the correct orientation.

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