Answer:
The correct answer is option D. "A single origin of the low plating gene in the oceanic population that remained at a low frequency until lakes were colonized. Then the gene independently became fixed in each".
Step-by-step explanation:
In this example, the adaptation of low platting in Stickleback fish made difficult to establish a clade based on the gene responsible of this trait, because the analysis with other genes suggest that the genes evolved independently. The scientists resolved the contradictory gene trees by suggesting the existence of a single origin of the low plating gene in the oceanic population that remained at a low frequency until lakes were colonized. Then the gene independently became fixed in each. This explains why the fish share the gene, and gives a coherent explanation of how an external factor (colonization) affected the genetic linage of this trait.